Data Science Lab Publications

in review:

Jones, K. E., Fér, T., Schmickl, R., Dikow, R. B., Funk, V. A., Herrando-Morraira, S., Johnston, P. R., Siniscalchi, C. M., Susanna, A., Slovák, M., Thapa, R., Watson, L., Mandel, J. R., in review at Applications in Plant Sciences. An empirical assessment of a single family-wide target capture locus set at multiple evolutionary timescales within the largest family of flowering plants.

Ohdera, A. H., Ames, C. L., Dikow, R. B., Kayal, E., Chiodin, M., Busby, B., La, S., Pirro, S., Collins, A. G., Medina, M., Ryan, J. F. in review at GigaScience. Box, stalked and upside-down? Draft genomes from diverse jellyfish (Cnidaria, Acraspeda) lineages: Alatina alata (Cubozoa), Calvadosia cruxmelitensis (Staurozoa), and Cassiopea xamachana (Scyphozoa).

in press: 

Cortes Rodrigues, N., Campana, M., Berry, L., Faegre, S., Derrickson, S., Ha, R., Dikow, R. B., Rutz, C., Fleischer, R. in press at Genes. Population genomics and structure of the critically endangered Mariana crow (Corvus kubaryi).

Ren, Z., von Dohlen, C. D., Harris, A. J., Dikow, R. B., Su, X., Wen, J. in press at PLoS One. Congruent phylogenetic relationships of Melaphidina aphids (Aphididae: Eriosomatinae: Fordini) according to nuclear and mitochondrial DNA data with taxonomic implications on generic limits. 

2018

Hawkins, M. T. R., Culligan, R. C., Dikow, R. B., Frasier, C.L., Lei, R., Louis Jr., E. E. accepted at BMC Genomics. Demographic history of the critically endangered greater bamboo lemur (Prolemur simus), evidence of population bottlenecks. doi: 10.1186/s12864-018-4841-4.

Clement, R. A., Frandsen, P. B., McKnight, T., Nelson, C. R. 2018. Fly family diversity shows evidence of livestock grazing pressure in Mongolia (Insecta: Diptera). Journal of Insect Conservation doi: 10.1007/s10841-018-0056-x


2017


Schuettpelz, E., Frandsen, P. B., Dikow, R. B., Brown, A., Orli, S., Peters, M., Metallo, A., Funk, V. A., Dorr, L. J. 2017. Applications of deep convolutional neural networks to digitized natural history collections. Biodiversity Data Journal. doi: 10.3897/BDJ.5.e21139 


Mandel, J. R., Barker, M. S., Bayer, R. J., Dikow, R. B., Gao, T-G. Katy E. Jones, K. E., Keeley, S., Kilian, N., Ma, H, Siniscalchi, C. M., Susanna, A, Thapa, R., Watson, L., Funk, V. A. 2017. The Compositae Tree of Life in the age of phylogenomics. Journal of Systematics and Evolution. doi:10.1111/jse.12265 


Ren, Z. Harris, A. J., Dikow, R. B., Ma, E., Zhong, Y., Wen, J. 2017. Another look at the phylogenetic relationships and intercontinental biogeography of eastern Asian & North American Rhus gall aphids (Hemiptera: Aphididae: Eriosomatinae): Evidence from mitogenome sequences via genome skimming. Molecular Phylogenetics and Evolution. doi: 10.1016/j.ympev.2017.05.017


Wen, J., Harris, A. J., Ickert-Bond, S. M., Dikow, R. B., Wurdack, K, Zimmer, E. A. 2017. Developing integrative systematics in the informatics and genomic era, and calling for a global Biodiversity Cyberbank. Journal of Systematics and Evolution. doi:10.1111/jse.12270


Dikow, R. B., Frandsen, P. B., Turcatel, M., Dikow, T. 2017. Genomic and transcriptomic resources for assassin flies including the complete genome sequence of Proctacanthus coquilletti (Insecta: Diptera: Asilidae) and 16 representative transcriptomes. PeerJ. doi:10.7717/peerj.2951